^ 3 teams promoted, 4 relegated because of reorganization league structure for 2006/07 (1st level 12 teams, 2nd level 12 teams, 3rd level two groups of 14 teams)
^ Steel Trans Li?artovce moved to Ko?ice and changed name to MFK Ko?ice.
^ FC Rimavská Sobota started the competition with -6 points.
^ Dru?stevník Bá? play home matches at ?amorín.
^ OFK Ve?ky Lapá? merged with FC Nitra and became their reserve team. Home matches played in Ve?ky Lapá?